- from the homepage, I clicked on BioMart,
- I chose Species->Genome->Fasciola PRJEB179522
- Then Multi-Species Comparisons->Homolog Filters->orthologous Fasciola PRJEB6687 only
- Then Count-> Says 8251 genes
- Then Attributes->Species->Genome name
- Then Attributes->Homologs->Orthologs->Fasciola hepatica (PRJEB6687) gene stable ID, %identity
This gave me a list of orthologs with their percent identity:
![](https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgBvw8LAMe9aDvzVRy6O_NYyxHfgJTjLwN6LmDmt_gzIKnBjKLa7hiUPCfD1JORsaRxK9kBtV_6ViCwEMhk7XUNfHFIww7vOPMnqihlkH1Awo68fATjexICFnPHYRTL67wj6qNmAkRM5NE/s640/Screen+Shot+2016-03-18+at+14.16.01.png)
Hurray!
Thanks to Bruce Bolt for help with this.