I've recently heard about the I-TASSER program for protein structure and function prediction.
Notes to self:
- there is a script runI-TASSER.pl on the Sanger farm for running it
- I-TASSER and its scripts currently live here:
- Users need the library location:
- Sample command:
/lustre/scratch118/infgen/pathogen/pathpipe/itasser -java_home /usr
-seqname example -datadir example -outdir itasser_out
- If users run it with the -light option that will limit
the simulation time to 5-6 hours which means they can get a smallish
protein (<100aa) through in approx 8 hours.